About NetworkAnalyzer

NetworkAnalyzer is a flash-based online software environment which enables biologists to easily visualize and analyze high-throughput experimental data in the context of complex protein network hypotheses, peform quantitative simulations, collaborate with colleagues, and publish experiments and analysis.

1 network biology 2 visualization & analysis 3 collaboration & open access

NetworkAnalyzer Source Code

Download

NetworkAnalyzer is distributed under the MIT license. Source code will be available from our SVN server.

Installation

  1. Install third party software
  2. Checkout source code from repository
  3. Setup MySQL database
    1. Install /db/schema.sql
    2. Install /db/procedures.sql
    3. Edit MXML configuration file src/edu/stanford/covertlab/networkanalyzer/data/AboutData.mxml
    4. Edit PHP configuration file /bin/configuration.php
  4. Install AMPPHP services
  5. Compile application /src/edu/stanford/covertlab/networkanalyzer/build.bat
  6. Run application /bin/NetworkAnalyzer.swf
  7. Edit source code using FlashDevelop

Documentation

ApplicationDiagram
Database Schema

See online documentation for more information.

License

The MIT License

Copyright (c) 2007-2009 Jonathan Karr, Harendra Guturu, Ed Chen, and Markus Covert

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.